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-rw-r--r--kubernetes/portal/charts/portal-app/templates/deployment.yaml2
-rw-r--r--kubernetes/portal/charts/portal-cassandra/values.yaml2
-rw-r--r--kubernetes/portal/charts/portal-mariadb/resources/config/mariadb/docker-entrypoint.sh312
-rw-r--r--kubernetes/portal/charts/portal-mariadb/values.yaml2
4 files changed, 163 insertions, 155 deletions
diff --git a/kubernetes/portal/charts/portal-app/templates/deployment.yaml b/kubernetes/portal/charts/portal-app/templates/deployment.yaml
index 5503328df4..dc27fdb6db 100644
--- a/kubernetes/portal/charts/portal-app/templates/deployment.yaml
+++ b/kubernetes/portal/charts/portal-app/templates/deployment.yaml
@@ -55,6 +55,8 @@ spec:
- ""
- -n
- ""
+ - -b
+ - "{{ .Values.global.env.tomcatDir }}"
env:
- name: CATALINA_OPTS
value: >
diff --git a/kubernetes/portal/charts/portal-cassandra/values.yaml b/kubernetes/portal/charts/portal-cassandra/values.yaml
index c46ca4238c..e08f59b971 100644
--- a/kubernetes/portal/charts/portal-cassandra/values.yaml
+++ b/kubernetes/portal/charts/portal-cassandra/values.yaml
@@ -69,7 +69,7 @@ persistence:
## GKE, AWS & OpenStack)
##
# storageClass: "-"
- accessMode: ReadWriteMany
+ accessMode: ReadWriteOnce
size: 2Gi
mountPath: /dockerdata-nfs
mountSubPath: portal/cassandra/data
diff --git a/kubernetes/portal/charts/portal-mariadb/resources/config/mariadb/docker-entrypoint.sh b/kubernetes/portal/charts/portal-mariadb/resources/config/mariadb/docker-entrypoint.sh
index f00bf8b71d..28fcee1551 100644
--- a/kubernetes/portal/charts/portal-mariadb/resources/config/mariadb/docker-entrypoint.sh
+++ b/kubernetes/portal/charts/portal-mariadb/resources/config/mariadb/docker-entrypoint.sh
@@ -4,18 +4,18 @@ shopt -s nullglob
# if command starts with an option, prepend mysqld
if [ "${1:0:1}" = '-' ]; then
- set -- mysqld "$@"
+ set -- mysqld "$@"
fi
# skip setup if they want an option that stops mysqld
wantHelp=
for arg; do
- case "$arg" in
- -'?'|--help|--print-defaults|-V|--version)
- wantHelp=1
- break
- ;;
- esac
+ case "$arg" in
+ -'?'|--help|--print-defaults|-V|--version)
+ wantHelp=1
+ break
+ ;;
+ esac
done
# usage: file_env VAR [DEFAULT]
@@ -23,168 +23,174 @@ done
# (will allow for "$XYZ_DB_PASSWORD_FILE" to fill in the value of
# "$XYZ_DB_PASSWORD" from a file, especially for Docker's secrets feature)
file_env() {
- local var="$1"
- local fileVar="${var}_FILE"
- local def="${2:-}"
- if [ "${!var:-}" ] && [ "${!fileVar:-}" ]; then
- echo >&2 "error: both $var and $fileVar are set (but are exclusive)"
- exit 1
- fi
- local val="$def"
- if [ "${!var:-}" ]; then
- val="${!var}"
- elif [ "${!fileVar:-}" ]; then
- val="$(< "${!fileVar}")"
- fi
- export "$var"="$val"
- unset "$fileVar"
+ local var="$1"
+ local fileVar="${var}_FILE"
+ local def="${2:-}"
+ if [ "${!var:-}" ] && [ "${!fileVar:-}" ]; then
+ echo >&2 "error: both $var and $fileVar are set (but are exclusive)"
+ exit 1
+ fi
+ local val="$def"
+ if [ "${!var:-}" ]; then
+ val="${!var}"
+ elif [ "${!fileVar:-}" ]; then
+ val="$(< "${!fileVar}")"
+ fi
+ export "$var"="$val"
+ unset "$fileVar"
}
_check_config() {
- toRun=( "$@" --verbose --help --log-bin-index="$(mktemp -u)" )
- if ! errors="$("${toRun[@]}" 2>&1 >/dev/null)"; then
- cat >&2 <<-EOM
-
- ERROR: mysqld failed while attempting to check config
- command was: "${toRun[*]}"
-
- $errors
- EOM
- exit 1
- fi
+ toRun=( "$@" --verbose --help --log-bin-index="$(mktemp -u)" )
+ if ! errors="$("${toRun[@]}" 2>&1 >/dev/null)"; then
+ cat >&2 <<-EOM
+ ERROR: mysqld failed while attempting to check config
+ command was: "${toRun[*]}"
+ $errors
+ EOM
+ exit 1
+ fi
}
# Fetch value from server config
# We use mysqld --verbose --help instead of my_print_defaults because the
# latter only show values present in config files, and not server defaults
_get_config() {
- local conf="$1"; shift
- "$@" --verbose --help --log-bin-index="$(mktemp -u)" 2>/dev/null | awk '$1 == "'"$conf"'" { print $2; exit }'
+ local conf="$1"; shift
+ "$@" --verbose --help --log-bin-index="$(mktemp -u)" 2>/dev/null \
+ | awk '$1 == "'"$conf"'" && /^[^ \t]/ { sub(/^[^ \t]+[ \t]+/, ""); print; exit }'
+ # match "datadir /some/path with/spaces in/it here" but not "--xyz=abc\n datadir (xyz)"
}
# allow the container to be started with `--user`
if [ "$1" = 'mysqld' -a -z "$wantHelp" -a "$(id -u)" = '0' ]; then
- _check_config "$@"
- DATADIR="$(_get_config 'datadir' "$@")"
- mkdir -p "$DATADIR"
- find "$DATADIR" \! -user mysql -exec chown mysql '{}' +
- exec gosu mysql "$BASH_SOURCE" "$@"
+ _check_config "$@"
+ DATADIR="$(_get_config 'datadir' "$@")"
+ mkdir -p "$DATADIR"
+ find "$DATADIR" \! -user mysql -exec chown mysql '{}' +
+ exec gosu mysql "$BASH_SOURCE" "$@"
fi
if [ "$1" = 'mysqld' -a -z "$wantHelp" ]; then
- # still need to check config, container may have started with --user
- _check_config "$@"
- # Get config
- DATADIR="$(_get_config 'datadir' "$@")"
-
- if [ ! -d "$DATADIR/mysql" ]; then
- file_env 'MYSQL_ROOT_PASSWORD'
- if [ -z "$MYSQL_ROOT_PASSWORD" -a -z "$MYSQL_ALLOW_EMPTY_PASSWORD" -a -z "$MYSQL_RANDOM_ROOT_PASSWORD" ]; then
- echo >&2 'error: database is uninitialized and password option is not specified '
- echo >&2 ' You need to specify one of MYSQL_ROOT_PASSWORD, MYSQL_ALLOW_EMPTY_PASSWORD and MYSQL_RANDOM_ROOT_PASSWORD'
- exit 1
- fi
-
- mkdir -p "$DATADIR"
-
- echo 'Initializing database'
- # "Other options are passed to mysqld." (so we pass all "mysqld" arguments directly here)
- mysql_install_db --datadir="$DATADIR" --rpm "${@:2}"
- echo 'Database initialized'
-
- SOCKET="$(_get_config 'socket' "$@")"
- "$@" --skip-networking --socket="${SOCKET}" &
- pid="$!"
-
- mysql=( mysql --protocol=socket -uroot -hlocalhost --socket="${SOCKET}" )
-
- for i in {60..0}; do
- if echo 'SELECT 1' | "${mysql[@]}" &> /dev/null; then
- break
- fi
- echo 'MySQL init process in progress...'
- sleep 1
- done
- if [ "$i" = 0 ]; then
- echo >&2 'MySQL init process failed.'
- exit 1
- fi
-
- if [ -z "$MYSQL_INITDB_SKIP_TZINFO" ]; then
- # sed is for https://bugs.mysql.com/bug.php?id=20545
- mysql_tzinfo_to_sql /usr/share/zoneinfo | sed 's/Local time zone must be set--see zic manual page/FCTY/' | "${mysql[@]}" mysql
- fi
-
- if [ ! -z "$MYSQL_RANDOM_ROOT_PASSWORD" ]; then
- export MYSQL_ROOT_PASSWORD="$(pwgen -1 32)"
- echo "GENERATED ROOT PASSWORD: $MYSQL_ROOT_PASSWORD"
- fi
-
- rootCreate=
- # default root to listen for connections from anywhere
- file_env 'MYSQL_ROOT_HOST' '%'
- if [ ! -z "$MYSQL_ROOT_HOST" -a "$MYSQL_ROOT_HOST" != 'localhost' ]; then
- # no, we don't care if read finds a terminating character in this heredoc
- # https://unix.stackexchange.com/questions/265149/why-is-set-o-errexit-breaking-this-read-heredoc-expression/265151#265151
- read -r -d '' rootCreate <<-EOSQL || true
- CREATE USER 'root'@'${MYSQL_ROOT_HOST}' IDENTIFIED BY '${MYSQL_ROOT_PASSWORD}' ;
- GRANT ALL ON *.* TO 'root'@'${MYSQL_ROOT_HOST}' WITH GRANT OPTION ;
- EOSQL
- fi
-
- "${mysql[@]}" <<-EOSQL
- -- What's done in this file shouldn't be replicated
- -- or products like mysql-fabric won't work
- SET @@SESSION.SQL_LOG_BIN=0;
-
- DELETE FROM mysql.user WHERE user NOT IN ('mysql.sys', 'mysqlxsys', 'root') OR host NOT IN ('localhost') ;
- SET PASSWORD FOR 'root'@'localhost'=PASSWORD('${MYSQL_ROOT_PASSWORD}') ;
- GRANT ALL ON *.* TO 'root'@'localhost' WITH GRANT OPTION ;
- ${rootCreate}
- DROP DATABASE IF EXISTS test ;
- FLUSH PRIVILEGES ;
- EOSQL
-
- if [ ! -z "$MYSQL_ROOT_PASSWORD" ]; then
- mysql+=( -p"${MYSQL_ROOT_PASSWORD}" )
- fi
-
- file_env 'MYSQL_DATABASE'
- if [ "$MYSQL_DATABASE" ]; then
- echo "CREATE DATABASE IF NOT EXISTS \`$MYSQL_DATABASE\` ;" | "${mysql[@]}"
- mysql+=( "$MYSQL_DATABASE" )
- fi
-
- file_env 'MYSQL_USER'
- file_env 'MYSQL_PASSWORD'
- if [ "$MYSQL_USER" -a "$MYSQL_PASSWORD" ]; then
- echo "CREATE USER '$MYSQL_USER'@'%' IDENTIFIED BY '$MYSQL_PASSWORD' ;" | "${mysql[@]}"
-
- if [ "$MYSQL_DATABASE" ]; then
- echo "GRANT ALL ON \`$MYSQL_DATABASE\`.* TO '$MYSQL_USER'@'%' ;" | "${mysql[@]}"
- fi
- fi
-
- echo
- for f in /docker-entrypoint-initdb.d/*; do
- case "$f" in
- *.sh) echo "$0: running $f"; . "$f" ;;
- *.sql) echo "$0: running $f"; "${mysql[@]}" < "$f"; echo ;;
- *.sql.gz) echo "$0: running $f"; gunzip -c "$f" | "${mysql[@]}"; echo ;;
- *) echo "$0: ignoring $f" ;;
- esac
- echo
- done
-
- if ! kill -s TERM "$pid" || ! wait "$pid"; then
- echo >&2 'MySQL init process failed.'
- exit 1
- fi
-
- echo
- echo 'MySQL init process done. Ready for start up.'
- echo
- fi
+ # still need to check config, container may have started with --user
+ _check_config "$@"
+ # Get config
+ DATADIR="$(_get_config 'datadir' "$@")"
+
+ if [ ! -d "$DATADIR/mysql" ]; then
+ file_env 'MYSQL_ROOT_PASSWORD'
+ if [ -z "$MYSQL_ROOT_PASSWORD" -a -z "$MYSQL_ALLOW_EMPTY_PASSWORD" -a -z "$MYSQL_RANDOM_ROOT_PASSWORD" ]; then
+ echo >&2 'error: database is uninitialized and password option is not specified '
+ echo >&2 ' You need to specify one of MYSQL_ROOT_PASSWORD, MYSQL_ALLOW_EMPTY_PASSWORD and MYSQL_RANDOM_ROOT_PASSWORD'
+ exit 1
+ fi
+
+ mkdir -p "$DATADIR"
+
+ echo 'Initializing database'
+ installArgs=( --datadir="$DATADIR" --rpm )
+ if { mysql_install_db --help || :; } | grep -q -- '--auth-root-authentication-method'; then
+ # beginning in 10.4.3, install_db uses "socket" which only allows system user root to connect, switch back to "normal" to allow mysql root without a password
+ # see https://github.com/MariaDB/server/commit/b9f3f06857ac6f9105dc65caae19782f09b47fb3
+ # (this flag doesn't exist in 10.0 and below)
+ installArgs+=( --auth-root-authentication-method=normal )
+ fi
+ # "Other options are passed to mysqld." (so we pass all "mysqld" arguments directly here)
+ mysql_install_db "${installArgs[@]}" "${@:2}"
+ echo 'Database initialized'
+
+ SOCKET="$(_get_config 'socket' "$@")"
+ "$@" --skip-networking --socket="${SOCKET}" &
+ pid="$!"
+
+ mysql=( mysql --protocol=socket -uroot -hlocalhost --socket="${SOCKET}" )
+
+ for i in {60..0}; do
+ if echo 'SELECT 1' | "${mysql[@]}" &> /dev/null; then
+ break
+ fi
+ echo 'MySQL init process in progress...'
+ sleep 1
+ done
+ if [ "$i" = 0 ]; then
+ echo >&2 'MySQL init process failed.'
+ exit 1
+ fi
+
+ if [ -z "$MYSQL_INITDB_SKIP_TZINFO" ]; then
+ # sed is for https://bugs.mysql.com/bug.php?id=20545
+ mysql_tzinfo_to_sql /usr/share/zoneinfo | sed 's/Local time zone must be set--see zic manual page/FCTY/' | "${mysql[@]}" mysql
+ fi
+
+ if [ ! -z "$MYSQL_RANDOM_ROOT_PASSWORD" ]; then
+ export MYSQL_ROOT_PASSWORD="$(pwgen -1 32)"
+ echo "GENERATED ROOT PASSWORD: $MYSQL_ROOT_PASSWORD"
+ fi
+
+ rootCreate=
+ # default root to listen for connections from anywhere
+ file_env 'MYSQL_ROOT_HOST' '%'
+ if [ ! -z "$MYSQL_ROOT_HOST" -a "$MYSQL_ROOT_HOST" != 'localhost' ]; then
+ # no, we don't care if read finds a terminating character in this heredoc
+ # https://unix.stackexchange.com/questions/265149/why-is-set-o-errexit-breaking-this-read-heredoc-expression/265151#265151
+ read -r -d '' rootCreate <<-EOSQL || true
+ CREATE USER 'root'@'${MYSQL_ROOT_HOST}' IDENTIFIED BY '${MYSQL_ROOT_PASSWORD}' ;
+ GRANT ALL ON *.* TO 'root'@'${MYSQL_ROOT_HOST}' WITH GRANT OPTION ;
+ EOSQL
+ fi
+
+ "${mysql[@]}" <<-EOSQL
+ -- What's done in this file shouldn't be replicated
+ -- or products like mysql-fabric won't work
+ SET @@SESSION.SQL_LOG_BIN=0;
+ DELETE FROM mysql.user WHERE user NOT IN ('mysql.sys', 'mysqlxsys', 'root') OR host NOT IN ('localhost') ;
+ SET PASSWORD FOR 'root'@'localhost'=PASSWORD('${MYSQL_ROOT_PASSWORD}') ;
+ GRANT ALL ON *.* TO 'root'@'localhost' WITH GRANT OPTION ;
+ ${rootCreate}
+ DROP DATABASE IF EXISTS test ;
+ FLUSH PRIVILEGES ;
+ EOSQL
+
+ if [ ! -z "$MYSQL_ROOT_PASSWORD" ]; then
+ mysql+=( -p"${MYSQL_ROOT_PASSWORD}" )
+ fi
+
+ file_env 'MYSQL_DATABASE'
+ if [ "$MYSQL_DATABASE" ]; then
+ echo "CREATE DATABASE IF NOT EXISTS \`$MYSQL_DATABASE\` ;" | "${mysql[@]}"
+ mysql+=( "$MYSQL_DATABASE" )
+ fi
+
+ file_env 'MYSQL_USER'
+ file_env 'MYSQL_PASSWORD'
+ if [ "$MYSQL_USER" -a "$MYSQL_PASSWORD" ]; then
+ echo "CREATE USER '$MYSQL_USER'@'%' IDENTIFIED BY '$MYSQL_PASSWORD' ;" | "${mysql[@]}"
+
+ if [ "$MYSQL_DATABASE" ]; then
+ echo "GRANT ALL ON \`$MYSQL_DATABASE\`.* TO '$MYSQL_USER'@'%' ;" | "${mysql[@]}"
+ fi
+ fi
+
+ echo
+ for f in /docker-entrypoint-initdb.d/*; do
+ case "$f" in
+ *.sh) echo "$0: running $f"; . "$f" ;;
+ *.sql) echo "$0: running $f"; "${mysql[@]}" < "$f"; echo ;;
+ *.sql.gz) echo "$0: running $f"; gunzip -c "$f" | "${mysql[@]}"; echo ;;
+ *) echo "$0: ignoring $f" ;;
+ esac
+ echo
+ done
+
+ if ! kill -s TERM "$pid" || ! wait "$pid"; then
+ echo >&2 'MySQL init process failed.'
+ exit 1
+ fi
+
+ echo
+ echo 'MySQL init process done. Ready for start up.'
+ echo
+ fi
fi
exec "$@" \ No newline at end of file
diff --git a/kubernetes/portal/charts/portal-mariadb/values.yaml b/kubernetes/portal/charts/portal-mariadb/values.yaml
index e00f0fcebb..8869b94467 100644
--- a/kubernetes/portal/charts/portal-mariadb/values.yaml
+++ b/kubernetes/portal/charts/portal-mariadb/values.yaml
@@ -111,7 +111,7 @@ persistence:
## GKE, AWS & OpenStack)
##
# storageClass: "-"
- accessMode: ReadWriteMany
+ accessMode: ReadWriteOnce
size: 2Gi
mountPath: /dockerdata-nfs
mountSubPath: portal/mariadb/data