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The following output formats are directly supported by doxygen:

HTML

Generated if GENERATE_HTML is set to YES in the configuration file.

$\mbox{\LaTeX}$

Generated if GENERATE_LATEX is set to YES in the configuration file.

Man pages

Generated if GENERATE_MAN is set to YES in the configuration file.

RTF

Generated if GENERATE_RTF is set to YES in the configuration file.

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Note that the RTF output probably only looks nice with Microsoft's Word. If you have success with other programs, please let me know.

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XML

Generated if GENERATE_XML is set to YES in the configuration file.

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Docbook

Generated if GENERATE_DOCBOOOK is set to YES in the configuration file.

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The following output formats are indirectly supported by doxygen:

Compiled HTML Help (a.k.a. Windows 98 help): Generated by Microsoft's HTML Help workshop from the HTML output if GENERATE_HTMLHELP is set to YES.
Qt Compressed Help (.qch): Generated by Qt's qhelpgenerator tool from the HTML output if GENERATE_QHP is set to YES.
Eclipse Help: Generated from HTML with a special index file that is generated when GENERATE_ECLIPSEHELP is set to YES.
XCode DocSets: Compiled from HTML with a special index file that is generated when GENERATE_DOCSET is set to YES.
PostScript: Generated from the $\mbox{\LaTeX}$ output by running make ps in the output directory. For the best results PDF_HYPERLINKS should be set to NO.
PDF: Generated from the $\mbox{\LaTeX}$ output by running make pdf in the output directory. To improve the PDF output, you typically would want to enable the use of pdflatex by setting USE_PDFLATEX to YES in the configuration file. In order to get hyperlinks in the PDF file you also need to enable PDF_HYPERLINKS.

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